NMR Ensemble

1FYP

EUKARYOTIC DECODING REGION A-SITE RNA-PAROMOMYCIN COMPLEX

Structural Biology Knowledgebase: 1FYP SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 29
  • Selection Criteria: Structures with the Least Restraint Violations Structures with the Lowest Energy

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1FYP

Classification: RNA

Total Structure Weight: 9287.87

Macromolecule Entities
Molecule Chains Length Organism Details
FRAGMENT OF 18S RIBOSOMAL RNA A 27 synthetic EUKARYOTIC DECODING REGION A-SITE RNA

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PAR
Query on PAR

A PAROMOMYCIN
CATENULIN,, AMMINOSIDIN (Synonym)
C23 H45 N5 O14
UOZODPSAJZTQNH-LSWIJEOBSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
PAR N/A in BindingDB
N/A in BindingMoad
Kd: 2500 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 29
  • Selection Criteria: structures with the least restraint violations,structures with the lowest energy

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2000-10-02
  • Released Date: 2001-03-14
  • Deposition author(s): Lynch, S.R., Puglisi, J.D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4