1FPP

PROTEIN FARNESYLTRANSFERASE COMPLEX WITH FARNESYL DIPHOSPHATE

Structural Biology Knowledgebase: 1FPP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.300
  • R-Value Work: 0.230

Literature

Macromolecules
Sequence Display for 1FPP

Classification: PRENYLTRANSFERASE

Total Structure Weight: 93364.09

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN FARNESYLTRANSFERASE B 437 Rattus norvegicus EC#: 2.5.1.58 IUBMB
Details: PURIFIED RECOMBINANT FTASE WAS TREATED WITH PROTEASE GLUC PRIOR TO CRYSTALLIZATION
Gene Name(s): Fntb
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
PROTEIN FARNESYLTRANSFERASE A 377 Rattus norvegicus EC#: 2.5.1.58 IUBMB 2.5.1.59 IUBMB
Details: PURIFIED RECOMBINANT FTASE WAS TREATED WITH PROTEASE GLUC PRIOR TO CRYSTALLIZATION
Gene Name(s): Fnta
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FPP
Query on FPP

B FARNESYL DIPHOSPHATE
C15 H28 O7 P2
VWFJDQUYCIWHTN-YFVJMOTDSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

B PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
FPP N/A in BindingDB
N/A in BindingMoad
Kd: 10 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.75 Å
  • R-Value Free: 0.300
  • R-Value Work: 0.230
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 170.00 α = 90.00
b = 170.00 β = 90.00
c = 68.86 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1998-07-10
  • Released Date: 1999-06-08
  • Deposition author(s): Dunten, P., Kammlott, U., Crowther, R., Weber, D., Palermo, R., Birktoft, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4