1FJS

CRYSTAL STRUCTURE OF THE INHIBITOR ZK-807834 (CI-1031) COMPLEXED WITH FACTOR XA

Structural Biology Knowledgebase: 1FJS SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.92 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.196

Literature

Macromolecules
Sequence Display for 1FJS

Classification: BLOOD CLOTTING

Total Structure Weight: 33191.13

Macromolecule Entities
Molecule Chains Length Organism Details
COAGULATION FACTOR XA A 234 Homo sapiens EC#: 3.4.21.6 IUBMB
Fragment: HEAVY CHAIN, CATALYTIC DOMAIN
Gene Name(s): F10 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
COAGULATION FACTOR XA L 52 Homo sapiens EC#: 3.4.21.6 IUBMB
Fragment: LIGHT CHAIN, EPIDERMAL GROWTH FACTOR LIKE DOMAIN
Gene Name(s): F10 Gene View

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
Z34
Query on Z34

A N-[2-[5-[AMINO(IMINO)METHYL]-2-HYDROXYPHENOXY]- 3,5-DIFLUORO-6-[3-(4,5-DIHYDRO-1-METHYL-1H- IMIDAZOL-2-YL)PHENOXY]PYRIDIN-4-YL]-N-METHYLGLYCINE
C25 H24 F2 N6 O5
NPNSVNGQJGRSNR-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, L GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
Z34 Ki: 0.11 nM (100) BindingDB

Ki: 0.11 nM  BindingMOAD
Ki: 0.11 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.92 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.196
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 55.77 α = 90.00
b = 71.96 β = 90.00
c = 80.23 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-08-08
  • Released Date: 2000-10-04
  • Deposition author(s): Adler, M., Whitlow, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update