1FH0

CRYSTAL STRUCTURE OF HUMAN CATHEPSIN V COMPLEXED WITH AN IRREVERSIBLE VINYL SULFONE INHIBITOR

Structural Biology Knowledgebase: 1FH0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.197

Literature

Macromolecules
Sequence Display for 1FH0

Classification: HYDROLASE / HYDROLASE inhibitor

Total Structure Weight: 49331.81

Macromolecule Entities
Molecule Chains Length Organism Details
CATHEPSIN V A, B 221 Homo sapiens EC#: 3.4.22.43 IUBMB
Mutation: N108Q, N178D
Gene Name(s): CTSV Gene View CATL2 CTSL2 CTSU UNQ268/PRO305
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0IW
Query on 0IW

A, B Nalpha-[(4-methylpiperazin-1-yl)carbonyl]- N-[(3S)-1-phenyl-5-(phenylsulfonyl)pentan- 3-yl]-L-phenylalaninamide
APC-3316, bound form; 4-Methylpiperazine- 1-carboxylic acid [1-[(3-benzenesulfonyl- 1-phenethylallyl)carbamoyl]-2-phenylethyl]amide, bound form (Synonym)
C32 H40 N4 O4 S
VZSXPUDQSLKVIR-JDXGNMNLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000325
Query on PRD_000325
A, B MePip-Phe-HphVSPh Peptide-like /
Inhibitor
Ligand Explorer

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.211
  • R-Value Work: 0.197
  • Space Group: P 64 2 2

Unit Cell:

Length (Å) Angle (°)
a = 104.70 α = 90.00
b = 104.70 β = 90.00
c = 179.20 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-07-30
  • Released Date: 2001-07-30
  • Deposition author(s): Somoza, J.R.

Revision History

  • 2013-02-27
    Type: Other | Details: Add PRD info
  • 2011-10-12
    Type: Non-polymer description | Details: --
  • 2011-07-13
    Type: Linkage | Details: Linkage
  • 2011-07-13
    Type: Sequence database correspondence | Details: Sequence database correspondence
  • 2011-07-13
    Type: Polymer description | Details: Changed inhibitor presentation or chemistry
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Atom nomenclature | Details: Atom nomenclature
  • 2011-07-13
    Type: Binding sites and description | Details: Binding sites and description
  • 2011-07-13
    Type: Non-polymer description | Details: Non-polymer description
  • 2011-07-13
    Type: Function and keywords | Details: Function and keywords