LARGE RIBOSOMAL SUBUNIT COMPLEXED WITH R(CC)-DA-PUROMYCIN
DOI:10.2210/pdb1ffz/pdb   NDB ID: RR0013
1FFZ
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Ribosome
    Structure Weight: 196265.10
    Molecule: 23S RIBOSOMAL RNA
    Polymer: 1 Type: rna Length: 602
    Chains: A
    Fragment: DOMAIN V OF 23S RIBOSOMAL RNA
    Details: PART OF THE 50S LARGE RIBOSOMAL SUBUNIT
    Organism: Haloarcula marismortui
    Molecule: R(P*CP*C*)-D(P*A)-R(P*(PU))
    Polymer: 2 Type: hybrid Length: 4
    Chains: B
    Details: AN ANALOG OF A-SITE AMINOACYL-TRNA AND P-SITE PEPTIDYL-TRNA AS THEY ARE COVALENTLY LINKED BY THE TETRAHEDRAL CARBONYL CARBON INTERMEDIATE IN PEPTIDE BOND FORMATION. CONTAINS PU, PUROMYCIN-N-AMINOPHOSPHONIC ACID
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Haloarcula marismortui   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    1FFK   Complete atomic structure of the large ribosomal subunit at 2.4 A resolution 
    1FG0   Large ribosomal subunit complexed with CC-Puromycin 
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    PU
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    PU C22 H30 N7 O8 P A rnaLinking
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:RR0013
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Nissen, P.,  Hansen, J.,  Ban, N.,  Moore, P.B.,  Steitz, T.A.

    Deposition:   2000-07-26
    Release:   2000-08-28
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
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    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   3.20
    R-Value: n/a
    R-Free: n/a
    Space Group: C 2 2 21
    Unit Cell:
      Length [Å] Angles [°]
    a = 212.00 α = 90.00 
    b = 300.00 β = 90.00 
    c = 574.00 γ = 90.00