1FFU

CARBON MONOXIDE DEHYDROGENASE FROM HYDROGENOPHAGA PSEUDOFLAVA WHICH LACKS THE MO-PYRANOPTERIN MOIETY OF THE MOLYBDENUM COFACTOR

Structural Biology Knowledgebase: 1FFU SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.208

Literature

Macromolecules
Sequence Display for 1FFU

Classification: HYDROLASE

Total Structure Weight: 274144.47

Macromolecule Entities
Molecule Chains Length Organism Details
CUTS, IRON-SULFUR PROTEIN OF CARBON MONOXIDE DEHYDROGENASE A, D 163 Hydrogenophaga pseudoflava EC#: 1.2.99.2 IUBMB
Mutation: R90Q
Gene Name(s): cutS
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
CUTL, MOLYBDOPROTEIN OF CARBON MONOXIDE DEHYDROGENASE B, E 803 Hydrogenophaga pseudoflava EC#: 1.2.99.2 IUBMB
Mutation: R19G, P20A, R21S, A22R, C23L, A24R, R384X, C385X, W456L
Gene Name(s): cutL
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
CUTM, FLAVOPROTEIN OF CARBON MONOXIDE DEHYDROGENASE C, F 287 Hydrogenophaga pseudoflava EC#: 1.2.99.2 IUBMB
Mutation: H120D, Q177A, N207G, R226A, G228A, G229A, R230E, S231A, R232A
Gene Name(s): cutM
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

C, F FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CDP
Query on CDP

B, E CYTIDINE-5'-DIPHOSPHATE
C9 H15 N3 O11 P2
ZWIADYZPOWUWEW-XVFCMESISA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FES
Query on FES

A, D FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
ARO
Query on ARO
B, E L-PEPTIDE LINKING C6 H15 N4 O3 ARG
CSZ
Query on CSZ
B, E L-PEPTIDE LINKING C3 H7 N O2 S Se CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.208
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 87.24 α = 90.00
b = 193.88 β = 90.00
c = 218.29 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-07-26
  • Released Date: 2000-09-15
  • Deposition author(s): Haenzelmann, P., Dobbek, H., Gremer, L., Huber, R., Meyer, O.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4