1FEU

CRYSTAL STRUCTURE OF RIBOSOMAL PROTEIN TL5, ONE OF THE CTC FAMILY PROTEINS, COMPLEXED WITH A FRAGMENT OF 5S RRNA.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.208

Literature

Macromolecules
Sequence Display for 1FEU

Classification: RIBOSOME

Total Structure Weight: 74373.42


Macromolecule Entities
Molecule Chains Length Organism Details
50S RIBOSOMAL PROTEIN L25 A, D 206 Thermus thermophilus Gene Name(s): rplY rpl25 rptL5
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
19 NT FRAGMENT OF 5S RRNA B, E 19 synthetic
21 NT FRAGMENT OF 5S RRNA C, F 21 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CD
Query on CD

A, D CADMIUM ION
Cd
WLZRMCYVCSSEQC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

B, C, D, E, F MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.208
  • Space Group: P 31 1 2

Unit Cell:

Length (Å) Angle (°)
a = 109.90 α = 90.00
b = 109.90 β = 90.00
c = 137.51 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-07-23
  • Released Date: 2001-06-25
  • Deposition author(s): Fedorov, R.V., Meshcheryakov, V.A., Gongadze, G.M., Fomenkova, N.P., Nevskaya, N.A., Selmer, M., Laurberg, M., Kristensen, O., Al-Karadaghi, S., Liljas, A., Garber, M.B., Nikonov, S.V.

Revision History

  • Version 1_0: 2001-06-25

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance

  • Version 1_3: 2017-10-04

    Type: Data collection, Refinement description