1FDJ

FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE FROM RABBIT LIVER

Structural Biology Knowledgebase: 1FDJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.171

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1FDJ

Classification: LYASE

Total Structure Weight: 159935.73

Macromolecule Entities
Molecule Chains Length Organism Details
FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE A, B, C, D 363 Oryctolagus cuniculus EC#: 4.1.2.13 IUBMB
Mutation: T1051S
Gene Name(s): ALDOB Gene View ALDB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
2FP
Query on 2FP

A, B 1,6-FRUCTOSE DIPHOSPHATE (LINEAR FORM)
C6 H14 O12 P2
XPYBSIWDXQFNMH-PYWDMBMJSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
G3P
Query on G3P

B SN-GLYCEROL-3-PHOSPHATE
C3 H9 O6 P
AWUCVROLDVIAJX-GSVOUGTGSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
13P
Query on 13P

B, C, D 1,3-DIHYDROXYACETONEPHOSPHATE
C3 H7 O6 P
GNGACRATGGDKBX-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.214
  • R-Value Work: 0.171
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 377.25 α = 90.00
b = 130.54 β = 90.00
c = 80.03 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-07-20
  • Released Date: 2001-07-25
  • Deposition author(s): Blom, N.S., White, A., Sygusch, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4