1FD7

HEAT-LABILE ENTEROTOXIN B-PENTAMER WITH BOUND LIGAND BMSC001

Structural Biology Knowledgebase: 1FD7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.187

Literature

Macromolecules
Sequence Display for 1FD7

Classification: TOXIN

Total Structure Weight: 121970.31

Macromolecule Entities
Molecule Chains Length Organism Details
HEAT-LABILE ENTEROTOXIN B CHAIN D, E, F..., G, H, L, M, N, O, PD, E, F, G, H, L, M, N, O, P 103 Escherichia coli Gene Name(s): eltB ltpB
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AI1
Query on AI1

D, E, F, G, H, L, M, N, O, P N-BENZYL-3-(ALPHA-D-GALACTOS-1-YL)-BENZAMIDE
4, (Synonym)
C20 H23 N O7
FSMWGHKWKYCPKE-QTVCLEQKSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
AI1 N/A in BindingDB
IC50: 14000000 nM  BindingMOAD
IC50: 14000000 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.234
  • R-Value Work: 0.187
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 60.76 α = 90.00
b = 157.54 β = 116.53
c = 63.15 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-07-19
  • Released Date: 2000-08-10
  • Deposition author(s): Fan, E., Merritt, E.A., Pickens, J., Ahn, M., Hol, W.G.J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4