1FCX

ISOTYPE SELECTIVITY OF THE HUMAN RETINOIC ACID NUCLEAR RECEPTOR HRAR: THE COMPLEX WITH THE RARGAMMA-SELECTIVE RETINOID BMS184394

Structural Biology Knowledgebase: 1FCX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.47 Å
  • R-Value Free: 0.167
  • R-Value Work: 0.123

Literature

Macromolecules
Sequence Display for 1FCX

Classification: GENE REGULATION

Total Structure Weight: 27434.34

Macromolecule Entities
Molecule Chains Length Organism Details
RETINOIC ACID RECEPTOR GAMMA-1 A 235 Homo sapiens Fragment: LIGAND BINDING DOMAIN
Details: COMPLEXED WITH BMS184394, RESIDUE 184
Gene Name(s): RARG Gene View NR1B3
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LMU
Query on LMU

A DODECYL-ALPHA-D-MALTOSIDE
C24 H46 O11
NLEBIOOXCVAHBD-YHBSTRCHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
184
Query on 184

A 6-[HYDROXY-(5,5,8,8-TETRAMETHYL-5,6,7,8-TETRAHYDRO- NAPHTALEN-2-YL)-METHYL]-NAPHTALENE-2-CARBOXYLIC ACID
BMS184394 (Synonym)
C26 H28 O3
AYAJZQYENGWICE-QHCPKHFHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
184 Kd: 64 - 4095 nM (88 - 100) BindingDB

Kd: 64 nM  BindingMOAD
Kd: 64 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.47 Å
  • R-Value Free: 0.167
  • R-Value Work: 0.123
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 59.89 α = 90.00
b = 59.89 β = 90.00
c = 155.18 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-07-19
  • Released Date: 2000-09-11
  • Deposition author(s): Klaholz, B.P., Mitschler, A., Moras, D., Structural Proteomics in Europe (SPINE)

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4