1FBM

ASSEMBLY DOMAIN OF CARTILAGE OLIGOMERIC MATRIX PROTEIN IN COMPLEX WITH ALL-TRANS RETINOL


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 1FBM

Classification: CELL ADHESION

Total Structure Weight: 26782.10

Macromolecule Entities
Molecule Chains Length Organism Details
PROTEIN (CARTILAGE OLIGOMERIC MATRIX PROTEIN) A, B, C, D, E 46 Rattus norvegicus Fragment: ASSEMBLY DOMAIN
Mutation: G27M, H53Q, R54Q
Details: PENTAMERIC COILED-COIL
Gene Name(s): Comp
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
RTL
Query on RTL

B RETINOL
C20 H30 O
FPIPGXGPPPQFEQ-OVSJKPMPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
RTL N/A in BindingDB
N/A in BindingMoad
Kd: 600 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Observed:
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 38.47 α = 90.00
b = 49.47 β = 103.84
c = 54.98 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-07-16
  • Released Date: 2000-08-02
  • Deposition author(s): Guo, Y., Bozic, D., Malashkevich, V.N., Kammerer, R.A., Schulthess, T.

Revision History

  • 2008-04-27
    Type: Version format compliance
  • 2011-07-13
    Type: Version format compliance