1F7V

CRYSTAL STRUCTURE OF YEAST ARGINYL-TRNA SYNTHETASE COMPLEXED WITH THE TRNAARG

Structural Biology Knowledgebase: 1F7V SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.194

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1F7V

Classification: LIGASE / RNA

Total Structure Weight: 94192.40


Macromolecule Entities
Molecule Chains Length Organism Details
ARGINYL-TRNA SYNTHETASE A 607 Saccharomyces cerevisiae EC#: 6.1.1.19 IUBMB
Gene Name(s): YDR341C D9651.10
Macromolecule Entities
Molecule Chains Length Organism Details
TRNA(ARG) B 76 synthetic

Small Molecules
Modified Residues 8 Unique
ID Chains Type Formula 2D Diagram Parent
PSU
Query on PSU
B RNA LINKING C9 H13 N2 O9 P U
1MG
Query on 1MG
B RNA LINKING C11 H16 N5 O8 P G
2MG
Query on 2MG
B RNA LINKING C11 H16 N5 O8 P G
H2U
Query on H2U
B RNA LINKING C9 H15 N2 O9 P U
M2G
Query on M2G
B RNA LINKING C12 H18 N5 O8 P G
5MC
Query on 5MC
B RNA LINKING C10 H16 N3 O8 P C
5MU
Query on 5MU
B RNA LINKING C10 H15 N2 O9 P U
1MA
Query on 1MA
B RNA LINKING C11 H16 N5 O7 P A

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.194
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 107.72 α = 90.00
b = 129.61 β = 90.00
c = 184.01 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-06-28
  • Released Date: 2001-06-27
  • Deposition author(s): Delagoutte, B., Moras, D., Cavarelli, J.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update