NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop sl2 of the psi-RNA packaging signal. Implications for genome recognition
DOI:10.2210/pdb1f6u/pdb   NDB ID: 1F6U
1F6U
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Structural Protein/rna
    Structure Weight: 12678.07
    Molecule: HIV-1 STEM-LOOP SL2 FROM PSI-RNA PACKAGING
    Polymer: 1 Type: rna Length: 19
    Chains: B
    Molecule: HIV-1 NUCLEOCAPSID PROTEIN
    Polymer: 2 Type: protein Length: 56
    Chains: A
    Organism: Human immunodeficiency virus 1
    Gene Name: gag-pol
    UniProtKB: Protein Feature View | Search PDB | P35963  
     

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  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Human immunodeficiency virus 1   Taxonomy   Expression System: Escherichia coli  
     
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    Identifier Details
    1A1T   contains the same protein complexed with Stem-loop SL3 from HIV-1 
    1ESY   The unbound stem-loop SL2 from HIV-1 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ZN
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    ZN Zn
    ZINC ION
     
  •   Modified Residues Hide
    Identifier Formula Parent Type
    CG1
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    CG1 C11 H16 N5 O8 P G rnaLinking
    NH2
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    NH2 H2 N nonPolymer
     
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  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:1F6U
     
 
Data in orange boxes are gathered from external resources (when available).
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  •   Deposition Summary Hide
    Authors:   Amarasinghe, G.K.,  De Guzman, R.N.,  Turner, R.B.,  Chancellor, K.J.,  Summers, M.F.

    Deposition:   2000-06-23
    Release:   2000-10-09
    Last Modified (REVDAT):   2009-02-24
     
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    2011-07-13
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  •   Experimental Details Hide
    Method:   SOLUTION NMR
    Exp. Data:
    BMRB  
    NMR Ensemble
    Conformers Calculated:     400
    Conformers Submitted:     20
    Selection Criteria: target function
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    Method: SOLUTION NMR