NMR Ensemble

1F6U

NMR structure of the HIV-1 nucleocapsid protein bound to stem-loop sl2 of the psi-RNA packaging signal. Implications for genome recognition

Structural Biology Knowledgebase: 1F6U SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 400
  • Conformers Submitted: 20
  • Selection Criteria: Target Function

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1F6U

Classification: STRUCTURAL PROTEIN / RNA

Total Structure Weight: 12678.07


Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 NUCLEOCAPSID PROTEIN A 56 Human immunodeficiency virus 1 Mutation: R3K
Gene Name(s): gag-pol
Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 STEM-LOOP SL2 FROM PSI-RNA PACKAGING B 19 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
CG1
Query on CG1
B RNA linking C11 H16 N5 O8 P G
NH2
Query on NH2
A NON-POLYMER H2 N --

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 400
  • Conformers Submitted: 20
  • Selection Criteria: target function

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-06-23
  • Released Date: 2000-10-09
  • Deposition author(s): Amarasinghe, G.K., De Guzman, R.N., Turner, R.B., Chancellor, K.J., Summers, M.F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4