1F6C

CRYSTAL STRUCTURE OF THE B-DNA HEXAMER GGCGCC WITH SPERMINE

Structural Biology Knowledgebase: 1F6C SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.226

Literature

Macromolecules
Sequence Display for 1F6C

Classification: DNA

Total Structure Weight: 9455.78

Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*GP*CP*GP*CP*C)-3') A, B, C, D, E 6 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SPM
Query on SPM

B, D SPERMINE
C10 H26 N4
PFNFFQXMRSDOHW-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.288
  • R-Value Work: 0.226
  • Space Group: P 41 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 71.50 α = 90.00
b = 71.50 β = 90.00
c = 59.63 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2000-06-21
  • Released Date: 2000-08-28
  • Deposition author(s): Vargason, J.M., Eichman, B.F., Ho, P.S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4