1F66

2.6 A CRYSTAL STRUCTURE OF A NUCLEOSOME CORE PARTICLE CONTAINING THE VARIANT HISTONE H2A.Z

Structural Biology Knowledgebase: 1F66 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.192

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1F66

Classification: STRUCTURAL PROTEIN / DNA

Total Structure Weight: 199860.86


Macromolecule Entities
Molecule Chains Length Organism Details
HISTONE H3 A, E 136 Xenopus laevis Mutation: G434E, I517V
Gene Name(s):
HISTONE H4 B, F 103 Mus musculus Gene Name(s): Hist1h4a Hist1h4b H4-53 Hist1h4c H4-12 Hist1h4d Hist1h4f Hist1h4h Hist1h4i Hist1h4j Hist1h4k Hist1h4m Hist2h4a Hist2h4 Hist4h4
HISTONE H2A.Z C, G 128 Homo sapiens Gene Name(s): H2AFZ Gene View H2AZ
HISTONE H2B D, H 126 Xenopus laevis Mutation: S1229T
Gene Name(s):
Macromolecule Entities
Molecule Chains Length Organism Details
PALINDROMIC 146 BASE PAIR DNA FRAGMENT I, J 146 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MN
Query on MN

C, E, G, I, J MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.6 Å
  • R-Value Free: 0.250
  • R-Value Work: 0.192
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 105.66 α = 90.00
b = 183.21 β = 90.00
c = 109.92 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-06-20
  • Released Date: 2000-11-27
  • Deposition author(s): Suto, R.K., Clarkson, M.J., Tremethick, D.J., Luger, K.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4