1F3X

S402P MUTANT OF RABBIT MUSCLE PYRUVATE KINASE

Structural Biology Knowledgebase: 1F3X SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.241

Literature

Macromolecules
Sequence Display for 1F3X

Classification: TRANSFERASE

Total Structure Weight: 465403.84

Macromolecule Entities
Molecule Chains Length Organism Details
PYRUVATE KINASE A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 530 Oryctolagus cuniculus EC#: 2.7.1.40 IUBMB
Mutation: S402P
Gene Name(s): PKM Gene View PKM2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PYR
Query on PYR

A, B, C, D, E, F, G, H PYRUVIC ACID
C3 H4 O3
LCTONWCANYUPML-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A, B, C, D, E, F, G, H MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

A, B, C, D, E, F, G, H POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.270
  • R-Value Work: 0.241
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 82.14 α = 95.26
b = 108.71 β = 93.47
c = 144.39 γ = 112.24

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-06-06
  • Released Date: 2001-10-03
  • Deposition author(s): Wooll, J.O., Friesen, R.H.E., White, M.A., Watowich, S.J., Fox, R.O., Lee, J.C., Czerwinski, E.W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4