1F3E

A NEW TARGET FOR SHIGELLOSIS: RATIONAL DESIGN AND CRYSTALLOGRAPHIC STUDIES OF INHIBITORS OF TRNA-GUANINE TRANSGLYCOSYLASE

Structural Biology Knowledgebase: 1F3E SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 1F3E

Classification: TRANSFERASE

Total Structure Weight: 43183.61

Macromolecule Entities
Molecule Chains Length Organism Details
QUEUINE TRNA-RIBOSYLTRANSFERASE A 386 Zymomonas mobilis EC#: 2.4.2.29 IUBMB
Gene Name(s): tgt ZMO0363
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DPZ
Query on DPZ

A 3,5-DIAMINOPHTHALHYDRAZIDE
C8 H8 N4 O2
BAOICLZZDLLDRL-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
DPZ N/A in BindingDB
Ki: 200 nM  BindingMOAD
Ki: 200 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.238
  • R-Value Work: 0.195
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 90.67 α = 90.00
b = 64.94 β = 96.61
c = 71.05 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-06-02
  • Released Date: 2000-06-15
  • Deposition author(s): Graedler, U., Gerber, H.-D., Goodenough-Lashua, D.M., Garcia, G.A.G., Ficner, R., Reuter, K., Stubbs, M.T., Klebe, G.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values