1F2I

COCRYSTAL STRUCTURE OF SELECTED ZINC FINGER DIMER BOUND TO DNA

Structural Biology Knowledgebase: 1F2I SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.210

Literature

Macromolecules
Sequence Display for 1F2I

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 79174.79


Macromolecule Entities
Molecule Chains Length Organism Details
FUSION OF N-TERMINAL 17-MER PEPTIDE EXTENSION TO ZIF12 G, H, I..., J, K, LG, H, I, J, K, L 73 Mus musculus Fragment: ZIF12 CONTAINS ZINC FINGERS 1 AND 2 OF ZIF268
Gene Name(s): Egr1 Egr-1 Krox-24
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*AP*TP*GP*GP*GP*CP*GP*CP*GP*CP*CP*CP*AP*T)-3' A, B, C... , D, E, F A, B, C, D, E, F 14 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

G, H, I, J, K, L ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 0.256
  • R-Value Work: 0.210
  • Space Group: P 31

Unit Cell:

Length (Å) Angle (°)
a = 86.30 α = 90.00
b = 86.30 β = 90.00
c = 133.00 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-05-25
  • Released Date: 2001-09-14
  • Deposition author(s): Wang, B.S., Grant, R.A., Pabo, C.O.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4