1EY2

HUMAN HOMOGENTISATE DIOXYGENASE WITH FE(II)

Structural Biology Knowledgebase: 1EY2 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.193

Literature

Macromolecules
Sequence Display for 1EY2

Classification: OXIDOREDUCTASE

Total Structure Weight: 53705.05

Macromolecule Entities
Molecule Chains Length Organism Details
HOMOGENTISATE 1,2-DIOXYGENASE A 471 Homo sapiens EC#: 1.13.11.5 IUBMB
Mutation: M1M, M142M, M172M, M186M, M283M, M339M, M343M, M368M, M396M, M399M
Gene Name(s): HGD Gene View HGO
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FE2
Query on FE2

A FE (II) ION
Fe
CWYNVVGOOAEACU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.193
  • Space Group: P 63 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 157.81 α = 90.00
b = 157.81 β = 90.00
c = 95.15 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-05-05
  • Released Date: 2000-11-05
  • Deposition author(s): Timm, D.E., Titus, G.P., Penalva, M.A., Mueller, H.A., de Cordoba, S.M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values