1EOJ

Design of P1' and P3' residues of trivalent thrombin inhibitors and their crystal structures

Structural Biology Knowledgebase: 1EOJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.187

Literature

Macromolecules
Sequence Display for 1EOJ

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 35085.55

Macromolecule Entities
Molecule Chains Length Organism Details
ALPHA THROMBIN A 289 Homo sapiens EC#: 3.4.21.5 IUBMB
Mutation: E1CG
Gene Name(s): F2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
THROMBIN INHIBITOR P798 B 14 synthetic

Small Molecules
Modified Residues 4 Unique
ID Chains Type Formula 2D Diagram Parent
BBS
Query on BBS
B NON-POLYMER C10 H14 O3 S --
CPI
Query on CPI
B D-PEPTIDE LINKING C6 H11 N O2 --
TIH
Query on TIH
B L-PEPTIDE LINKING C7 H9 N O2 S ALA
DOA
Query on DOA
B L-PEPTIDE LINKING C12 H25 N O2 --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.233
  • R-Value Work: 0.187
  • Space Group: C 1 2 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 70.80 α = 90.00
b = 72.00 β = 100.20
c = 72.90 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-03-23
  • Released Date: 2000-05-03
  • Deposition author(s): Slon-Usakiewicz, J.J., Sivaraman, J., Li, Y., Cygler, M., Konishi, Y.

Revision History

  • 2011-07-13
    Type: Linkage | Details: Linkage
  • 2011-07-13
    Type: Sequence database correspondence | Details: Sequence database correspondence
  • 2011-07-13
    Type: Polymer description | Details: Changed inhibitor presentation or chemistry
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Atom nomenclature | Details: Atom nomenclature
  • 2011-07-13
    Type: Binding sites and description | Details: Binding sites and description
  • 2011-07-13
    Type: Non-polymer description | Details: Non-polymer description
  • 2011-07-13
    Type: Function and keywords | Details: Function and keywords