1EO8

INFLUENZA VIRUS HEMAGGLUTININ COMPLEXED WITH A NEUTRALIZING ANTIBODY

Structural Biology Knowledgebase: 1EO8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.298
  • R-Value Work: 0.196

Literature

Macromolecules
Sequence Display for 1EO8

Classification: Viral protein / Immune system

Total Structure Weight: 104236.82

Macromolecule Entities
Molecule Chains Length Organism Details
HEMAGGLUTININ (HA1 CHAIN) A 328 Influenza a virus Fragment: BROMELAIN RELEASED FRAGMENT
Details: A RECOMBINANT INFLUENZA STRAIN CONTAINING A/AICHI/68 (H3N2) HEMAGGLUTININ
Gene Name(s): HA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
HEMAGGLUTININ (HA2 CHAIN) B 175 Influenza a virus Fragment: BROMELAIN RELEASED FRAGMENT
Details: A RECOMBINANT INFLUENZA STRAIN CONTAINING A/AICHI/68 (H3N2) HEMAGGLUTININ
Gene Name(s): HA
ANTIBODY (LIGHT CHAIN) L 210 Mus musculus Fragment: FAB FRAGMENT OF ANTIBODY BH151
Mutation: P40S
ANTIBODY (HEAVY CHAIN) H 217 Mus musculus Fragment: FAB FRAGMENT OF ANTIBODY BH151
Mutation: R64K, T187P, W188R

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

A ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.298
  • R-Value Work: 0.196
  • Space Group: P 3 2 1

Unit Cell:

Length (Å) Angle (°)
a = 138.15 α = 90.00
b = 138.15 β = 90.00
c = 129.50 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-03-22
  • Released Date: 2000-04-12
  • Deposition author(s): Fleury, D., Gigant, B., Daniels, R.S., Skehel, J.J., Knossow, M., Bizebard, T.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update