1EL5

COMPLEX OF MONOMERIC SARCOSINE OXIDASE WITH THE INHIBITOR DIMETHYLGLYCINE

Structural Biology Knowledgebase: 1EL5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.165

Literature

Macromolecules
Sequence Display for 1EL5

Classification: OXIDOREDUCTASE

Total Structure Weight: 88336.80

Macromolecule Entities
Molecule Chains Length Organism Details
SARCOSINE OXIDASE A, B 389 Bacillus sp. b-0618 EC#: 1.5.3.1 IUBMB
Gene Name(s): soxA sox
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DMG
Query on DMG

A, B N,N-DIMETHYLGLYCINE
DIMETHYLGLYCINE (Synonym)
C4 H9 N O2
FFDGPVCHZBVARC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PO4
Query on PO4

A, B PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
DMG N/A in BindingDB
Kd: 17400000 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.165
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 72.86 α = 90.00
b = 69.50 β = 94.25
c = 73.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-03-13
  • Released Date: 2000-12-06
  • Deposition author(s): Wagner, M.A., Trickey, P., Chen, Z.-W., Mathews, F.S., Jorns, M.S.

Revision History

  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4