NMR Ensemble

1EJZ

SOLUTION STRUCTURE OF A HNA-RNA HYBRID

Structural Biology Knowledgebase: 1EJZ SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 1
  • Selection Criteria: Structure Closest to the Average of All Refined Structures

wwPDB Validation report is not available for this NMR entry.


Literature

Macromolecules
Sequence Display for 1EJZ

Classification: RNA

Total Structure Weight: 5237.51

Macromolecule Entities
Molecule Chains Length Organism Details
RNA (5'-R(*CP*GP*CP*UP*AP*CP*GP*C)-3') A 8 synthetic
DNA (5'-H(*(6HG)P*(6HC)P*(6HG)P*(6HT)P*(6HA)P*(6HG)P*(6HC)P*(6HG))-3') B 8 synthetic THE SUGAR MOIETIES ARE NOT DEOXYRIBOSE BUT D-ARABINO-HEXITOL

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PDI
Query on PDI

B PHOSPHORIC ACID MONO-(3-HYDROXY-PROPYL) ESTER
C3 H9 O5 P
HYCSHFLKPSMPGO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 4 Unique
ID Chains Type Formula 2D Diagram Parent
6HG
Query on 6HG
B DNA LINKING C11 H16 N5 O7 P DG
6HC
Query on 6HC
B DNA LINKING C10 H16 N3 O7 P DC
6HT
Query on 6HT
B DNA LINKING C11 H17 N2 O8 P DT
6HA
Query on 6HA
B DNA LINKING C11 H16 N5 O6 P DA

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 100
  • Conformers Submitted: 1
  • Selection Criteria: structure closest to the average of all refined structures

Structure Validation

Validation report is not available for this NMR entry.



Entry History

Deposition Data

  • Deposited Date: 2000-03-06
  • Released Date: 2000-10-23
  • Deposition author(s): Lescrnier, E., Esnouf, R., Heus, H.A., Hilbers, C.W., Herdewijn, P.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4