1EJN

UROKINASE PLASMINOGEN ACTIVATOR B-CHAIN INHIBITOR COMPLEX

Structural Biology Knowledgebase: 1EJN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.200

Literature

Macromolecules
Sequence Display for 1EJN

Classification: HYDROLASE

Total Structure Weight: 28882.04

Macromolecule Entities
Molecule Chains Length Organism Details
UROKINASE-TYPE PLASMINOGEN ACTIVATOR A 253 Homo sapiens EC#: 3.4.21.73 IUBMB
Fragment: B CHAIN
Mutation: C122S
Gene Name(s): PLAU Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AGB
Query on AGB

A N-(1-ADAMANTYL)-N'-(4-GUANIDINOBENZYL)UREA
C19 H27 N5 O
YQPLKJCBEOVDBS-CSVIQDERSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
AGB Ki: 2400 nM (99) BindingDB

Ki: 2400 nM  BindingMOAD
Ki: 2400 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.200
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 52.85 α = 90.00
b = 54.77 β = 90.00
c = 81.58 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-04-22
  • Released Date: 2000-05-17
  • Deposition author(s): Sperl, S., Jacob, U., Arroyo de Prada, N., Stuerzebecher, J., Wilhelm, O.G., Bode, W., Magdolen, V., Huber, R., Moroder, L.

Revision History

  • 2015-01-21
    Type: Refinement description | Details: --
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4