1EIX

STRUCTURE OF OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE FROM E. COLI, CO-CRYSTALLISED WITH THE INHIBITOR BMP

Structural Biology Knowledgebase: 1EIX SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.191

Literature

Macromolecules
Sequence Display for 1EIX

Classification: LYASE

Total Structure Weight: 106874.27

Macromolecule Entities
Molecule Chains Length Organism Details
OROTIDINE 5'-MONOPHOSPHATE DECARBOXYLASE A, B, C, D 245 Escherichia coli EC#: 4.1.1.23 IUBMB
Gene Name(s): pyrF b1281 JW1273
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BMQ
Query on BMQ

A, B, C, D 1-(5'-PHOSPHO-BETA-D-RIBOFURANOSYL)BARBITURIC ACID
C9 H13 N2 O10 P
AODYJUNLDJOADV-YXZULKJRSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
BMQ N/A in BindingDB
Ki: 0.0088 nM  BindingMOAD
Ki: 0.0088 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.264
  • R-Value Work: 0.191
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 61.28 α = 90.00
b = 95.92 β = 90.00
c = 145.02 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-02-29
  • Released Date: 2000-03-15
  • Deposition author(s): Harris, P., Poulsen, J.C.N., Jensen, K.F., Larsen, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4