1E8M

PROLYL OLIGOPEPTIDASE FROM PORCINE BRAIN, MUTANT, COMPLEXED WITH INHIBITOR

Structural Biology Knowledgebase: 1E8M SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.193

Literature

Macromolecules
Sequence Display for 1E8M

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 81247.54

Macromolecule Entities
Molecule Chains Length Organism Details
PROLYL ENDOPEPTIDASE A 710 Sus scrofa EC#: 3.4.21.26 IUBMB
Mutation: S554A
Gene Name(s): PREP Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
P0H
Query on P0H

A N-[(benzyloxy)carbonyl]glycyl-L-proline
C15 H18 N2 O5
ZTUKZKYDJMGJDC-LBPRGKRZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_000691
Query on PRD_000691
A N-[(benzyloxy)carbonyl]glycyl-L-proline Peptide-like /
Inhibitor
Ligand Explorer

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.193
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 71.10 α = 90.00
b = 100.10 β = 90.00
c = 111.30 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-09-27
  • Released Date: 2001-01-16
  • Deposition author(s): Fulop, V.

Revision History

  • 2012-12-12
    Type: Other | Details: Add PRD info
  • 2011-07-13
    Type: Atom nomenclature | Details: Atom nomenclature
  • 2011-07-13
    Type: Binding sites and description | Details: Binding sites and description
  • 2011-07-13
    Type: Non-polymer description | Details: Non-polymer description
  • 2011-07-13
    Type: Function and keywords | Details: Function and keywords
  • 2011-07-13
    Type: Linkage | Details: Linkage
  • 2011-07-13
    Type: Sequence database correspondence | Details: Sequence database correspondence
  • 2011-07-13
    Type: Polymer description | Details: Changed inhibitor presentation or chemistry
  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4