1E87

HUMAN CD69 - TRIGONAL FORM

Structural Biology Knowledgebase: 1E87 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.229

Literature

Macromolecules
Sequence Display for 1E87

Classification: SUGAR BINDING PROTEIN

Total Structure Weight: 13964.13

Macromolecule Entities
Molecule Chains Length Organism Details
EARLY ACTIVATION ANTIGEN CD69 A 118 Homo sapiens Fragment: C-TYPE LECTIN-LIKE DOMAIN, RESIDUES 82-199
Gene Name(s): CD69 Gene View CLEC2C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.245
  • R-Value Work: 0.229
  • Space Group: P 31 2 1

Unit Cell:

Length (Å) Angle (°)
a = 48.42 α = 90.00
b = 48.42 β = 90.00
c = 119.89 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-09-18
  • Released Date: 2000-09-26
  • Deposition author(s): Tormo, J.

Revision History

  • 2011-08-24
    Type: Polymer description | Details: COMPND
  • 2011-08-24
    Type: Other | Details: REMARK 465,REMARK 525,HEADER
  • 2011-08-24
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2011-08-24
    Type: Version format compliance | Details: REMARK 4
  • 2011-08-24
    Type: Function and keywords | Details: KEYWDS
  • 2011-08-24
    Type: Refinement description | Details: REMARK 3
  • 2011-08-24
    Type: Non-polymer description | Details: HETSYN,FORMUL
  • 2011-08-24
    Type: Geometry validation | Details: REMARK 500