1E5J

ENDOGLUCANASE CEL5A FROM BACILLUS AGARADHAERENS IN THE TETRAGONAL CRYSTAL FORM IN COMPLEX WITH METHYL-4II-S-ALPHA- CELLOBIOSYL-4II-THIO-BETA-CELLOBIOSIDE

Structural Biology Knowledgebase: 1E5J SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.177

Literature

Macromolecules
Sequence Display for 1E5J

Classification: HYDROLASE

Total Structure Weight: 35065.54

Macromolecule Entities
Molecule Chains Length Organism Details
ENDOGLUCANASE 5A A 305 [bacillus] agaradhaerens EC#: 3.2.1.4 IUBMB
Fragment: CATALYTIC CORE DOMAIN, RESIDUES 27-331
Gene Name(s): cel5A
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SGC
Query on SGC

A 4-DEOXY-4-THIO-BETA-D-GLUCOPYRANOSE
C6 H12 O5 S
KGSURTOFVLAWDC-QZABAPFNSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MGL
Query on MGL

A O1-METHYL-GLUCOSE
C7 H14 O6
HOVAGTYPODGVJG-XUUWZHRGSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GLC
Query on GLC

A ALPHA-D-GLUCOSE
C6 H12 O6
WQZGKKKJIJFFOK-DVKNGEFBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.177
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 74.52 α = 90.00
b = 74.52 β = 90.00
c = 136.19 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-07-26
  • Released Date: 2001-07-26
  • Deposition author(s): Fort, S., Varrot, A., Schulein, M., Cottaz, S., Driguez, H., Davies, G.J.

Revision History

  • 2012-11-28
    Type: Function and keywords | Details: KEYWDS
  • 2012-11-28
    Type: Sequence database correspondence | Details: SEQADV,DBREF
  • 2012-11-28
    Type: Binding sites and description | Details: REMARK 800,SITE
  • 2012-11-28
    Type: Non-polymer description | Details: FORMUL
  • 2012-11-28
    Type: Geometry validation | Details: REMARK 500
  • 2012-11-28
    Type: Polymer description | Details: COMPND
  • 2012-11-28
    Type: Source and taxonomy | Details: SOURCE
  • 2012-11-28
    Type: Other | Details: REMARK 525
  • 2012-11-28
    Type: Entry title | Details: TITLE
  • 2012-11-28
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2012-11-28
    Type: Version format compliance | Details: REMARK 4