1E5F

METHIONINE GAMMA-LYASE (MGL) FROM TRICHOMONAS VAGINALIS

Structural Biology Knowledgebase: 1E5F SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.18 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.162

Literature

Macromolecules
Sequence Display for 1E5F

Classification: LYASE

Total Structure Weight: 89462.72

Macromolecule Entities
Molecule Chains Length Organism Details
METHIONINE GAMMA-LYASE A, B 404 Trichomonas vaginalis EC#: 4.4.1.11 IUBMB
Gene Name(s): mgl1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PLP
Query on PLP

A, B PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.18 Å
  • R-Value Free: 0.212
  • R-Value Work: 0.162
  • Space Group: P 31 1 2

Unit Cell:

Length (Å) Angle (°)
a = 88.26 α = 90.00
b = 88.26 β = 90.00
c = 217.85 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-07-25
  • Released Date: 2001-07-19
  • Deposition author(s): Goodall, G., Mottram, J.C., Coombs, G.H., Lapthorn, A.J.

Revision History

  • 2012-11-14
    Type: Sequence database correspondence | Details: DBREF
  • 2011-08-31
    Type: Geometry validation | Details: REMARK 500
  • 2011-08-31
    Type: Function and keywords | Details: KEYWDS
  • 2011-08-31
    Type: Other | Details: REMARK 465,REMARK 525,HEADER,REMARK 280
  • 2011-08-31
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2011-08-31
    Type: Version format compliance | Details: REMARK 4
  • 2011-08-31
    Type: Atom nomenclature | Details: HETATM
  • 2011-08-31
    Type: Non-polymer description | Details: HETSYN,FORMUL