1E5E

METHIONINE GAMMA-LYASE (MGL) FROM TRICHOMONAS VAGINALIS IN COMPLEX WITH PROPARGYLGLYCINE

Structural Biology Knowledgebase: 1E5E SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.18 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.140

Literature

Macromolecules
Sequence Display for 1E5E

Classification: LYASE

Total Structure Weight: 89689.02

Macromolecule Entities
Molecule Chains Length Organism Details
METHIONINE GAMMA-LYASE A, B 404 Trichomonas vaginalis EC#: 4.4.1.11 IUBMB
Details: COVALENT LINK BETWEEN PROPARGYLGLYCINE AND TYR 111
Gene Name(s): TVAG_041600
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PPJ
Query on PPJ

A, B N-(HYDROXY{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN- 4-YL}METHYL)NORVALINE
C13 H19 N2 O8 P
XZPXXYMXESJHME-PMICCBOBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.18 Å
  • R-Value Free: 0.193
  • R-Value Work: 0.140
  • Space Group: P 31 1 2

Unit Cell:

Length (Å) Angle (°)
a = 88.26 α = 90.00
b = 88.26 β = 90.00
c = 217.85 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-07-25
  • Released Date: 2001-07-19
  • Deposition author(s): Goodall, G., Mottram, J.C., Coombs, G.H., Lapthorn, A.J.

Revision History

  • 2014-02-05
    Type: Data collection | Details: REMARK 200
  • 2014-02-05
    Type: Source and taxonomy | Details: SOURCE
  • 2011-11-09
    Type: Function and keywords | Details: KEYWDS
  • 2011-11-09
    Type: Atom nomenclature | Details: HETATM
  • 2011-11-09
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2011-11-09
    Type: Version format compliance | Details: REMARK 4
  • 2011-11-09
    Type: Polymer description | Details: COMPND
  • 2011-11-09
    Type: Other | Details: REMARK 465,REMARK 525,HEADER
  • 2011-11-09
    Type: Non-polymer description | Details: HETSYN,FORMUL
  • 2011-11-09
    Type: Geometry validation | Details: REMARK 500