1E2R

CYTOCHROME CD1 NITRITE REDUCTASE, REDUCED AND CYANIDE BOUND

Structural Biology Knowledgebase: 1E2R SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.192

Literature

Macromolecules
Sequence Display for 1E2R

Classification: OXIDOREDUCTASE

Total Structure Weight: 128106.93

Macromolecule Entities
Molecule Chains Length Organism Details
NITRITE REDUCTASE A, B 567 Paracoccus denitrificans EC#: 1.7.2.1 IUBMB
Mutation: T185S, S191T, D331N
Gene Name(s): nirS
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
DHE
Query on DHE

A, B HEME D
C34 H32 Fe N4 O10
XLQCGNUTSJTZNF-SOFPVUHFDM
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HEC
Query on HEC

A, B HEME C
C34 H34 Fe N4 O4
HXQIYSLZKNYNMH-LJNAALQVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CYN
Query on CYN

A, B CYANIDE ION
C N
XFXPMWWXUTWYJX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.192
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 106.50 α = 90.00
b = 60.90 β = 111.90
c = 100.10 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-05-24
  • Released Date: 2000-05-30
  • Deposition author(s): Fulop, V.

Revision History

  • 2011-10-19
    Type: Other | Details: REMARK 465,REMARK 525,REMARK 280
  • 2011-10-19
    Type: Non-polymer description | Details: HETSYN,FORMUL
  • 2011-10-19
    Type: Geometry validation | Details: REMARK 500
  • 2011-10-19
    Type: Function and keywords | Details: KEYWDS
  • 2011-10-19
    Type: Data collection | Details: REMARK 200
  • 2011-10-19
    Type: Biological assembly | Details: REMARK 300,REMARK 350
  • 2011-10-19
    Type: Version format compliance | Details: REMARK 4
  • 2011-10-19
    Type: Polymer description | Details: COMPND