1DZP

Porcine Odorant Binding Protein Complexed with diphenylmethanone

Structural Biology Knowledgebase: 1DZP SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.83 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.207

Literature

Macromolecules
Sequence Display for 1DZP

Classification: TRANSPORT PROTEIN

Total Structure Weight: 35807.57

Macromolecule Entities
Molecule Chains Length Organism Details
ODORANT-BINDING PROTEIN A, B 157 Sus scrofa Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BZQ
Query on BZQ

A, B DIPHENYLMETHANONE
BENZENE, BENZOYL-; BENZOPHENONE (8CI); BENZOYLBENZENE; DIPHENYL KETONE; KETONE, DIPHENYL; METHANONE, DIPHENYL- (9CI); PHENYL KETONE; WLN: RVR (Synonym)
C13 H10 O
RWCCWEUUXYIKHB-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
BZQ N/A in BindingDB
IC50: 3600 nM  BindingMOAD
IC50: 3600 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.83 Å
  • R-Value Free: 0.254
  • R-Value Work: 0.207
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 42.08 α = 90.00
b = 88.29 β = 90.00
c = 93.59 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-03-06
  • Released Date: 2000-12-06
  • Deposition author(s): Vincent, F., Spinelli, S., Cambillau, C., Tegoni, M.

Revision History

  • 2013-11-13
    Type: Function and keywords | Details: KEYWDS
  • 2013-11-13
    Type: Binding sites and description | Details: SITE
  • 2013-11-13
    Type: Non-polymer description | Details: HETSYN,FORMUL
  • 2013-11-13
    Type: Version format compliance | Details: REMARK 4
  • 2013-11-13
    Type: Polymer description | Details: COMPND
  • 2013-11-13
    Type: Other | Details: REMARK 525,HEADER
  • 2013-11-13
    Type: Entry title | Details: TITLE
  • 2013-11-13
    Type: Biological assembly | Details: REMARK 300,REMARK 350