1DZM

PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH BENZOIC ACID PHENYLMETHYLESTER

Structural Biology Knowledgebase: 1DZM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.235

Literature

Macromolecules
Sequence Display for 1DZM

Classification: ODORANT BINDING PROTEIN

Total Structure Weight: 35867.63

Macromolecule Entities
Molecule Chains Length Organism Details
ODORANT-BINDING PROTEIN A, B 157 Sus scrofa Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BZM
Query on BZM

A, B BENZOIC ACID PHENYLMETHYLESTER
C14 H12 O2
SESFRYSPDFLNCH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
BZM N/A in BindingDB
IC50: 3900 nM  BindingMOAD
IC50: 3900 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.235
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 42.01 α = 90.00
b = 88.68 β = 90.00
c = 93.16 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-03-03
  • Released Date: 2000-12-06
  • Deposition author(s): Vincent, F., Spinelli, S., Ramoni, R., Grolli, S., Pelosi, P., Cambillau, C., Tegoni, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4