1DZJ

PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH 2-AMINO-4-BUTYL-5-PROPYLSELENAZOLE

Structural Biology Knowledgebase: 1DZJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.229

Literature

Macromolecules
Sequence Display for 1DZJ

Classification: TRANSPORT

Total Structure Weight: 35933.58

Macromolecule Entities
Molecule Chains Length Organism Details
ODORANT-BINDING PROTEIN A, B 157 Sus scrofa Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SES
Query on SES

A, B 4-butyl-5-propyl-1,3-selenazol-2-amine
C10 H18 N2 Se
DOUUMUUUWUAPPC-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
SES N/A in BindingDB
IC50: 1300 nM  BindingMOAD
IC50: 1300 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.229
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 42.36 α = 90.00
b = 88.74 β = 90.00
c = 93.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-03-01
  • Released Date: 2000-12-06
  • Deposition author(s): Vincent, F., Spinelli, S., Cambillau, C., Tegoni, M.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: Compliance with PDBx exchange dictionary V4
  • 2011-07-13
    Type: Atom occupancy | Details: Restore author's atom occupancy