1DZH

P14-FLUORESCEIN-N135Q-S380C-ANTITHROMBIN-III

Structural Biology Knowledgebase: 1DZH SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.207

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1DZH

Classification: BLOOD CLOTTING

Total Structure Weight: 101066.81

Macromolecule Entities
Molecule Chains Length Organism Details
ANTITHROMBIN-III I 432 Homo sapiens Mutation: N135Q, S380X
Details: INHIBITORY CONFORMATION FLUORESCEIN ATTACHED AT CYS380 (P14)
Gene Name(s): SERPINC1 Gene View AT3 PRO0309
ANTITHROMBIN-III L 432 Homo sapiens Details: LATENT CONFORMATION
Gene Name(s): SERPINC1 Gene View AT3 PRO0309

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BMA
Query on BMA

L BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer
 
JSmol
GOL
Query on GOL

I, L GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
NAG
Query on NAG

I, L N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer
 
JSmol
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
CYF
Query on CYF
I L-PEPTIDE LINKING C25 H23 N3 O7 S CYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.258
  • R-Value Work: 0.207
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 69.18 α = 90.00
b = 99.86 β = 105.63
c = 89.42 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-02-28
  • Released Date: 2000-05-26
  • Deposition author(s): Mccoy, A.J., Huntington, J.A., Carrell, R.W.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4