1DXY

STRUCTURE OF D-2-HYDROXYISOCAPROATE DEHYDROGENASE

Structural Biology Knowledgebase: 1DXY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.196

Literature

Macromolecules
Sequence Display for 1DXY

Classification: OXIDOREDUCTASE

Total Structure Weight: 37915.89

Macromolecule Entities
Molecule Chains Length Organism Details
D-2-HYDROXYISOCAPROATE DEHYDROGENASE A 333 Lactobacillus casei EC#: 1.1.1 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

A NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
COI
Query on COI

A 2-OXO-4-METHYLPENTANOIC ACID
alpha-ketoisocaproic acid (Synonym)
C6 H10 O3
BKAJNAXTPSGJCU-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.217
  • R-Value Work: 0.196
  • Space Group: P 63 2 2

Unit Cell:

Length (Å) Angle (°)
a = 134.10 α = 90.00
b = 134.10 β = 90.00
c = 125.10 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-08-13
  • Released Date: 1997-06-16
  • Deposition author(s): Dengler, U., Niefind, K., Kiess, M., Schomburg, D.

Revision History

  • 2017-03-15
    Type: Linkage | Details: --
  • 2011-11-16
    Type: Atom occupancy | Details: Atom occupancy
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Biological assembly | Details: Added software calculated values