1DW1

STRUCTURE OF THE CYANIDE COMPLEX OF SHP, AN OXYGEN BINDING CYTOCHROME C


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.171

Literature

Macromolecules
Sequence Display for 1DW1

Classification: OXYGEN STORAGE / TRANSPORT

Total Structure Weight: 36636.89

Macromolecule Entities
Molecule Chains Length Organism Details
CYTOCHROME C A, B, C 112 Rhodobacter sphaeroides Gene Name(s): shp RHOS4_06040 RSP_2021
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B, C PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CYN
Query on CYN

A, B, C CYANIDE ION
C N
XFXPMWWXUTWYJX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.198
  • R-Value Work: 0.171
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 83.35 α = 90.00
b = 103.50 β = 90.00
c = 113.66 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-01-24
  • Released Date: 2000-06-28
  • Deposition author(s): Leys, D., Backers, K., Meyer, T.E., Hagen, W.R., Cusanovich, M.A., Van Beeumen, J.J.

Revision History

  • Version 1_0: 2000-06-28

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance