1DVF

IDIOTOPIC ANTIBODY D1.3 FV FRAGMENT-ANTIIDIOTOPIC ANTIBODY E5.2 FV FRAGMENT COMPLEX

Structural Biology Knowledgebase: 1DVF SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.194

Literature

Macromolecules
Sequence Display for 1DVF

Classification: COMPLEX (IDIOTOPE-ANTIIDIOTOPE)

Total Structure Weight: 50003.75

Macromolecule Entities
Molecule Chains Length Organism Details
FV D1.3 A 108 Mus musculus Mutation: E3V, K50Y, A51T, Q52T, ΔP95, W96R
Details: IGG1, KAPPA
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
FV D1.3 B 116 Mus musculus Mutation: V112L
Details: IGG1, KAPPA
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
FV E5.2 C 107 Mus musculus Mutation: M4L, T7S, T8P
Details: IGG1, KAPPA
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
FV E5.2 D 121 Mus musculus Details: IGG1, KAPPA
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

B, C, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.194
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 152.80 α = 90.00
b = 79.40 β = 100.20
c = 51.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-04-13
  • Released Date: 1996-08-17
  • Deposition author(s): Braden, B.C., Fields, B.A., Ysern, X., Dall'Acqua, W., Goldbaum, F.A., Poljak, R.J., Mariuzza, R.A.

Revision History

  • 2011-11-16
    Type: Atom occupancy | Details: Atom occupancy
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4