1DTH

METALLOPROTEASE

Structural Biology Knowledgebase: 1DTH SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed: 0.168

Literature

Macromolecules
Sequence Display for 1DTH

Classification: HYDROLASE

Total Structure Weight: 47717.27

Macromolecule Entities
Molecule Chains Length Organism Details
ATROLYSIN C A, B 203 Crotalus atrox EC#: 3.4.24.42 IUBMB
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
BAT
Query on BAT

A, B 4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL- L-PHENYLALANINE-N-METHYLAMIDE
BATIMASTAT; BB94 (Synonym)
C23 H31 N3 O4 S2
XFILPEOLDIKJHX-QYZOEREBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A, B CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
BAT N/A in BindingDB
IC50: 6 nM  BindingMOAD
IC50: 6 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Observed: 0.168
  • Space Group: P 65

Unit Cell:

Length (Å) Angle (°)
a = 97.21 α = 90.00
b = 97.21 β = 90.00
c = 87.91 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1996-02-12
  • Released Date: 1997-02-12
  • Deposition author(s): Botos, I., Scapozza, L., Zhang, D., Liotta, L.A., Meyer, E.F.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4