1DT1

THERMUS THERMOPHILUS CYTOCHROME C552 SYNTHESIZED BY ESCHERICHIA COLI

Structural Biology Knowledgebase: 1DT1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.182

Literature

Macromolecules
Sequence Display for 1DT1

Classification: OXIDOREDUCTASE

Total Structure Weight: 14611.99

Macromolecule Entities
Molecule Chains Length Organism Details
CYTOCHROME C552 A 129 Thermus thermophilus Gene Name(s): cycA TTHA1423
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.262
  • R-Value Work: 0.182
  • Space Group: P 65
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 86.90 α = 90.00
b = 86.90 β = 90.00
c = 31.85 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-01-10
  • Released Date: 2000-02-18
  • Deposition author(s): Fee, J.A., Chen, Y., Hill, M.J., Gomez-Moran, E., Loehr, T., Ai, J., Thony-Meyer, L., Williams, P.A., Stura, E., Sridhar, V., McRee, D.E.

Revision History

  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4