1DSZ

STRUCTURE OF THE RXR/RAR DNA-BINDING DOMAIN HETERODIMER IN COMPLEX WITH THE RETINOIC ACID RESPONSE ELEMENT DR1

Structural Biology Knowledgebase: 1DSZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.198

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1DSZ

Classification: TRANSCRIPTION / DNA

Total Structure Weight: 29654.19


Macromolecule Entities
Molecule Chains Length Organism Details
RETINOIC ACID RECEPTOR ALPHA A 86 Homo sapiens Fragment: RESIDUES 82-167
Gene Name(s): RARA Gene View NR1B1
RETINOIC ACID RECEPTOR RXR-ALPHA B 85 Homo sapiens Fragment: RESIDUES 129-212
Gene Name(s): RXRA Gene View NR2B1
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*CP*AP*GP*GP*TP*CP*AP*AP*AP*GP*GP*TP*CP*AP*G)-3') C 15 synthetic
DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*TP*TP*GP*AP*CP*CP*TP*G)-3') D 15 synthetic

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.198
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 80.66 α = 90.00
b = 33.90 β = 90.00
c = 101.86 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-01-10
  • Released Date: 2000-07-10
  • Deposition author(s): Rastinejad, F., Wagner, T., Zhao, Q., Khorasanizadeh, S.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4