1DQB

NMR STRUCTURE OF THROMBOMODULIN EGF(4-5)

Structural Biology Knowledgebase: 1DQB SBKB.org


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 50
  • Conformers Submitted: 12
  • Selection Criteria: Structures with the Least Restraint Violations

Literature

Macromolecules
Sequence Display for 1DQB

Classification: MEMBRANE PROTEIN

Total Structure Weight: 9742.80

Macromolecule Entities
Molecule Chains Length Organism Details
THROMBOMODULIN A 83 Homo sapiens Fragment: THE FOURTH AND FIFTH EGF-LIKE DOMAINS
Mutation: C1H, V2M
Details: residues 346-426
Gene Name(s): THBD Gene View THRM
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 50
  • Conformers Submitted: 12
  • Selection Criteria: structures with the least restraint violations

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2000-01-03
  • Released Date: 2000-03-06
  • Deposition author(s): Wood, M.J., Sampoli-Benitez, B.A., Komives, E.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Non-polymer description | Details: chemical name/synonym update