1DMA

DOMAIN III OF PSEUDOMONAS AERUGINOSA EXOTOXIN COMPLEXED WITH NICOTINAMIDE AND AMP

Structural Biology Knowledgebase: 1DMA SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 1DMA

Classification: ADP-RIBOSYLATION

Total Structure Weight: 47259.93

Macromolecule Entities
Molecule Chains Length Organism Details
EXOTOXIN A A, B 214 Pseudomonas aeruginosa EC#: 2.4.2.36 IUBMB
Gene Name(s): eta PA1148
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AMP
Query on AMP

B ADENOSINE MONOPHOSPHATE
C10 H14 N5 O7 P
UDMBCSSLTHHNCD-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NCA
Query on NCA

A, B NICOTINAMIDE
C6 H6 N2 O
DFPAKSUCGFBDDF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.195
  • Space Group: P 43 21 2

Unit Cell:

Length (Å) Angle (°)
a = 87.51 α = 90.00
b = 87.51 β = 90.00
c = 134.08 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-04-28
  • Released Date: 1995-09-15
  • Deposition author(s): Li, M., Dyda, F., Benhar, I., Pastan, I., Davies, D.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4