1DLM

STRUCTURE OF CATECHOL 1,2-DIOXYGENASE FROM ACINETOBACTER CALCOACETICUS NATIVE DATA

Structural Biology Knowledgebase: 1DLM SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.196

Literature

Macromolecules
Sequence Display for 1DLM

Classification: OXIDOREDUCTASE

Total Structure Weight: 70154.40

Macromolecule Entities
Molecule Chains Length Organism Details
CATECHOL 1,2-DIOXYGENASE A, B 311 Acinetobacter sp. adp1 EC#: 1.13.11.1 IUBMB
Gene Name(s): catA ACIAD1442
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LIO
Query on LIO

A, B [1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE
C33 H67 N O8 P
YAOVLDDMIGILIT-WJOKGBTCSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FE
Query on FE

A, B FE (III) ION
Fe
VTLYFUHAOXGGBS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.243
  • R-Value Work: 0.196
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 52.60 α = 90.00
b = 87.60 β = 96.30
c = 84.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-12-11
  • Released Date: 2000-05-23
  • Deposition author(s): Vetting, M.W., Ohlendorf, D.H.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4
  • 2011-07-13
    Type: Source and taxonomy | Details: Removed strain from scientific name