1DJ6

COMPLEX OF A Z-DNA HEXAMER, D(CG)3, WITH SYNTHETIC POLYAMINE AT ROOM TEMPERATURE

Structural Biology Knowledgebase: 1DJ6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.0 Å
  • R-Value Free: 0.169
  • R-Value Work: 0.140

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 1DJ6

Classification: DNA

Total Structure Weight: 3937.22

Macromolecule Entities
Molecule Chains Length Organism Details
5'-D(*CP*GP*CP*GP*CP*G)-3' A, B 6 synthetic

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
104
Query on 104

A, B N,N'-BIS(2-AMINOETHYL)-1,2-ETHANEDIAMINE
TRIENTINE (Synonym)
C6 H18 N4
VILCJCGEZXAXTO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.0 Å
  • R-Value Free: 0.169
  • R-Value Work: 0.140
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 17.93 α = 90.00
b = 31.36 β = 90.00
c = 44.62 γ = 90.00

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 1999-12-01
  • Released Date: 1999-12-18
  • Deposition author(s): Ohishi, H., Tomita, K.-i., Nakanishi, I., Ohtsuchi, M., Hakoshima, T., Rich, A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4