1DJ5

CRYSTAL STRUCTURE OF R48A MUTANT OF CYTOCHROME C PEROXIDASE WITH N-HYDROXYGUANIDINE BOUND

Structural Biology Knowledgebase: 1DJ5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Observed: 0.160

Literature

Macromolecules
Sequence Display for 1DJ5

Classification: OXIDOREDUCTASE

Total Structure Weight: 33831.70

Macromolecule Entities
Molecule Chains Length Organism Details
CYTOCHROME C PEROXIDASE A 291 Saccharomyces cerevisiae EC#: 1.11.1.5 IUBMB
Mutation: R48A
Gene Name(s): CCP1 CCP CPO Gene View YKR066C
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
HGU
Query on HGU

A N-HYDROXYGUANIDINE
C H5 N3 O
WFBHRSAKANVBKH-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Observed: 0.160
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 105.48 α = 90.00
b = 74.32 β = 90.00
c = 44.31 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-12-01
  • Released Date: 1999-12-10
  • Deposition author(s): Hirst, J., Goodin, D.B.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4