1DIT

COMPLEX OF A DIVALENT INHIBITOR WITH THROMBIN

Structural Biology Knowledgebase: 1DIT SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Observed: 0.149

Literature

Macromolecules
Sequence Display for 1DIT

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 36011.25

Macromolecule Entities
Molecule Chains Length Organism Details
ALPHA-THROMBIN L 36 Homo sapiens EC#: 3.4.21.5 IUBMB
Gene Name(s): F2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
ALPHA-THROMBIN H 259 Homo sapiens EC#: 3.4.21.5 IUBMB
Gene Name(s): F2 Gene View
PEPTIDE INHIBITOR CVS995 P 20 synthetic

Small Molecules
Modified Residues 2 Unique
ID Chains Type Formula 2D Diagram Parent
2PP
Query on 2PP
P NON-POLYMER C8 H16 O2 --
0MG
Query on 0MG
P peptide-like C7 H15 N4 O3 --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.3 Å
  • R-Value Observed: 0.149
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 70.90 α = 90.00
b = 72.20 β = 100.90
c = 73.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1995-07-20
  • Released Date: 1996-06-10
  • Deposition author(s): Tulinsky, A., Krishnan, R.

Revision History

  • 2011-07-13
    Type: Atom nomenclature | Details: Atom nomenclature
  • 2011-07-13
    Type: Binding sites and description | Details: Binding sites and description
  • 2011-07-13
    Type: Non-polymer description | Details: Non-polymer description
  • 2011-07-13
    Type: Function and keywords | Details: Function and keywords
  • 2011-07-13
    Type: Linkage | Details: Linkage
  • 2011-07-13
    Type: Sequence database correspondence | Details: Sequence database correspondence
  • 2011-07-13
    Type: Polymer description | Details: Changed inhibitor presentation or chemistry
  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4