1DIB

HUMAN METHYLENETETRAHYDROFOLATE DEHYDROGENASE / CYCLOHYDROLASE COMPLEXED WITH NADP AND INHIBITOR LY345899


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.208

Literature

Macromolecules
Sequence Display for 1DIB

Classification: OXIDOREDUCTASE HYDROLASE

Total Structure Weight: 68635.07

Macromolecule Entities
Molecule Chains Length Organism Details
METHYLENETETRAHYDROFOLATE DEHYDROGENASE/CYCLOHYDROLASE A, B 306 Homo sapiens EC#: 1.5.1.5 IUBMB 3.5.4.9 IUBMB
Gene Name(s): MTHFD1 Gene View MTHFC MTHFD
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAP
Query on NAP

A, B NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE (Synonym)
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
L34
Query on L34

A 4-(7-AMINO-9-HYDROXY-1-OXO-3,3A,4,5-TETRAHYDRO- 2,5,6,8,9B-PENTAAZA-CYCLOPENTA[A]NAPHTHALEN- 2-YL)-PHENYLCARBONYL-GLUTAMIC ACID
LY345899 (Synonym)
C20 H21 N7 O7
JSNFRYBHBVDHSG-NEPJUHHUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.208
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 67.49 α = 90.00
b = 136.37 β = 90.00
c = 61.38 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-11-29
  • Released Date: 2000-07-05
  • Deposition author(s): Schmidt, A., Wu, H., MacKenzie, R.E., Chen, V.J., Bewly, J.R., Ray, J.E., Toth, J.E., Cygler, M.

Revision History

  • Version 1_0: 2000-07-05

    Type: Initial release

  • Version 1_1: 2008-04-27

    Type: Version format compliance

  • Version 1_2: 2011-07-13

    Type: Version format compliance