1DE8

HUMAN APURINIC/APYRIMIDINIC ENDONUCLEASE-1 (APE1) BOUND TO ABASIC DNA

Structural Biology Knowledgebase: 1DE8 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.312
  • R-Value Work: 0.190

Literature

Macromolecules
Sequence Display for 1DE8

Classification: LYASE / DNA

Total Structure Weight: 75596.41


Macromolecule Entities
Molecule Chains Length Organism Details
MAJOR APURINIC/APYRIMIDINIC ENDONUCLEASE A, B 276 Homo sapiens EC#: 3.1 IUBMB 4.2.99.18 IUBMB
Fragment: APE1
Gene Name(s): APEX1 Gene View APE APE1 APEX APX HAP1 Gene View REF1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*CP*TP*AP*CP*(3DR)P*GP*AP*TP*CP*G)-3') U, X 11 synthetic
DNA (5'-D(*CP*GP*AP*TP*CP*GP*GP*TP*AP*GP*C)-3') V, Y 11 synthetic

Small Molecules
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
3DR
Query on 3DR
U, X DNA LINKING C5 H11 O6 P --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.312
  • R-Value Work: 0.190
  • Space Group: I 41

Unit Cell:

Length (Å) Angle (°)
a = 122.85 α = 90.00
b = 122.85 β = 90.00
c = 107.07 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 1999-11-13
  • Released Date: 2000-02-02
  • Deposition author(s): Mol, C.D., Izumi, T., Mitra, S., Tainer, J.A.

Revision History

  • 2011-07-13
    Type: Version format compliance | Details: compliance with PDB Exchange Dictionary V4