POP-OUT | CLOSE
 
DIPHTHERIA TOX REPRESSOR (C102D MUTANT)/TOX DNA OPERATOR COMPLEX
DOI:10.2210/pdb1ddn/pdb   NDB ID: PD0004
1DDN
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Gene Regulation/dna
    Structure Weight: 122207.60
    Molecule: 33 BASE DNA CONTAINING TOXIN OPERATOR
    Polymer: 1 Type: dna Length: 33
    Chains: E
    Molecule: 33 BASE DNA CONTAINING TOXIN OPERATOR
    Polymer: 2 Type: dna Length: 33
    Chains: F
    Molecule: DIPHTHERIA TOX REPRESSOR
    Polymer: 3 Type: protein Length: 226
    Chains: A, B, C, D
    Mutation: C102D
    Organism: Corynebacterium diphtheriae
    Gene Names: dtxR DIP1414
    UniProtKB: Protein Feature View | Search PDB | P0DJL7  
     
  •   Structure Validation Hide

    Download full validation report    

     

  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Corynebacterium diphtheriae   Taxonomy   Expression System: Escherichia coli  
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    NI
    Search 
    Download 
    NI Ni
    NICKEL (II) ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: PD0004
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors
Downloadable viewers:
 
 
 
  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   White, A.,  Ding, X.,  Vanderspek, J.C.,  Murphy, J.R.,  Ringe, D.

    Deposition:   1998-06-23
    Release:   1998-10-14
    Last Modified (REVDAT):   2009-02-24
     
  •   Revision History    Hide
    Mouse over text for details
    2011-07-13
    Version format compliance
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
    N/A
    Resolution[Å]:   3.00
    R-Value: 0.240 (work)
    R-Free: 0.280
    Space Group: P 41
    Unit Cell:
      Length [Å] Angles [°]
    a = 117.05 α = 90.00 
    b = 117.05 β = 90.00 
    c = 145.34 γ = 90.00